SeqHBase
A big data toolset for family-based sequencing data analysis
Introduction
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Installation
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ETL sequencing data
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Detection of mutations
|
Command Parameters
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What's New
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Citations
Introduction
Installation
Dependencies
Availability
Installing VM bundling with SeqHBase
Installing pre-compiled release
Modifying parameters in configuration file
ETL sequencing data
Variant
Variation
Coverage (Read Depth)
Detection of mutations
De novo
and autosomal recessive (or X-linked) screens
Compound heterozygous screens
Command parameters
Citations
What's New?
Mar. 21, 2016:
Marshfield Clinic Study of Dead Patients' Genomes Reveals Multiple Actionable Mutations
Oct. 15, 2015:
Sequencing the Genomes of Dead People
Mar. 29, 2015:
SeqHBase 1.10 was released to support (the) latest versions of Apache Hadoop and HBase. And it was tested working on Apache Hadoop-2.6.0 and Apache HBase-0.98.11
.
Mar. 5, 2015:
Interview With Gholson Lyon (Cold Spring Harbor Laboratory)
Feb. 12, 2015:
Marshfield Clinic's SeqHBase Offers Toolset for Familial Sequencing-based Data Analysis
Jan. 19, 2015:
Drs. Kai Wang and Reid Robison Contribute to Article About New Big Data Toolset SeqHBase
Jan. 13, 2015:
BMJ Blogs - SeqHBase: a big data toolset for family-based sequencing data analysis
Jan. 13, 2015:
SeqHBase paper -
SeqHBase: a big data toolset for family-based sequencing data analysis
was published in
Journal of Medical Genetics